New Topics

Publication (English)

Bold indicates the first authors and * indicates correspondence.

  1. A critical review on current challenges in analysis of microplastics (MPs) in food samples. - Bhavsar PS, Dongare PR, Shimada Y, Gore AH*. ACS Food Sci Techonol. 2023;Epub ahead of print.
  2. Oral administration of rhamnan sulfate from Monostroma nitidum suppressed atherosclerosis in ApoE-deficient mice fed a high-fat diet. - Terasawa M, Zang L, Hiramoto K, Shimada Y, Mitsunaka M, Uchida R, Nishiura K, Matsuda K, Nishimura N, Suzuki K*. Cells. 2023;12:2666.
  3. Beneficial Effects of Seaweed-derived Components on Metabolic Syndrome via Gut Microbiota Modulation. - Zang L*, Baharlooeian M, Terasawa M, Shimada Y, Nishimura N. Front Nurt. 2023;10:1173225.
  4. Tetraploidy-linked sensitization to CENP-E inhibition in human cells. - Yoshizawa K, Matsura A, Shimada M, Ishihara IS, Sato F, Yamamoto T, Yaguchi K, Kawamoto E, Kuroda T, Matsuo K, Tamaoki N, Shimada Y, Mishra M, Uehara R*. Mol Oncol;17:1148-1166.
  5. Paraburkholderia sabiae administration alters zebrafish anxiety-like behavior via gut microbial taurine metabolism. - Ichikawa S, Abe R, Fujimoto H, Higashi K, Zang L, Nakayama H, Matsuoka I, Shimada Y*. Front Microbiol. 2023;14:1079187.
  6. Zebrafish models for skeletal muscle senescence: lessons from culture cells and rodent models. - Ichii S, Matsuoka I, Okazaki F, Shimada Y*. Molecules. 2022;27:8625.
  7. Application of omics approaches for assessing microplastic and nanoplastic toxicity in fish and seafood species. - Bhagat J, Zang L, Nishimura N, Shimada Y*. Trends Analyt Chem. 2022;154:116674.
  8. Combined exposure to nanoplastics and metal oxide nanoparticles inhibits efflux pumps and causes oxidative stress in zebrafish embryos. - Bhagat J, Zang L, Kaneco S, Nishimura N, Shimada Y*.  Sci Total Environ. 2022;835:155436.
  9. Editorial: Zebrafish Models for Human Disease Studies. - Zang L*, Torraca V, Shimada Y, Nishimura N. : Front Cell Dev Biol. 2022;10:861941.
  10. Zebrafish obesogenic test identifies anti-adipogenic fraction in Moringa oreifera leaf extracts. - Matsuoka I, Hata K, Katsuzaki H, Zang L, Ota M, Kim Y, Chu D, Juneja L, Nishimura N, Shimada Y*. Food Sci Nurt. 2022;00:1-9.
  11. Transcriptome Analysis of Molecular Response to UVC Irradiation in Zebrafish Embryos. - Zang L*, Shimada Y, Miyake H, Nishimura N. Ecotoxicol Environ Safe. 2022;231:113211.
  12. Globin digest improves visceral adiposity through UCP1 upregulation in diet-induced obese zebrafish and mice. - Zang L*, Shimada Y, Nakayama H, Matsuoka I, Kim Y, Chu D, Juneja LR, Tsuruta R, Sasakawa Y, Kuroyanagi J, Nishimura N. Front Nurt. 2021;8:650975.
  13. Effects of nanoplastic on toxicity of azole fungicides (ketoconazole and fluconazole) in zebrafish embryos. - Bhagat J, Zang L, Nakayama H, Nishimura N, Shimada Y*. Sci Total Environ. 2021;800:149463.
  14. Rhamnan sulphate from green algae Monostroma nitidum improves constipation with gut microbiome alteration in double-blind placebo-controlled trial. - Shimada Y*, Terasawa M, Okazaki F, Nakayama H, Zang L, Nishiura K, Matsuda K, Nishimura N. Sci Rep. 2021;11:13384.
  15. Ecotoxicological effects of TiO2 nanoparticulates and bulk Ti on microalgae Chaetoceros muelleri. - Baharlooeian M, Kerdgari M*, Shimada Y. Environ Technol Innov. 2021;23:101720.
  16. Toxicity of jegosaponins A and B from Styrax japonica Siebold et al. Zuccarini in prostate cancer cells and zebrafish embryos resulting from increased membrane permeability. - Nishimura M, Fuchino H, Takayanagi K, Kawakami H, Nakayama N, Kawahara N, Shimada Y*. Int J Mol Sci. 2021;22,6354.
  17. Preventive Effects of green tea extract against obesity development in zebrafish. - Zang L*, Shimada Y, Nakayama H, Kim Y, Chu D, Juneja LR, Kuroyanagi J, Nishimura N.  Molecules. 2021;26:2627.
  18. Worming into a robust model to unravel the micro/nanoplastic toxicity in soil: A review on Caenorhabditis elegans. - Bhagat J, Nishimura N, Shimada Y*. Trends Analyt Chem. 2021;138:116235.
  19. 10-Gingerol Suppresses Osteoclastogenesis in RAW264.7 Cells and Zebrafish Osteoporotic Scales. - Zang L, Kagotani K, Nakayama H, Bhagat J, Fujimoto Y, Hayashi A, Sono R, Katsuzaki H, Nishimura N, Shimada Y*. Front Cell Dev Biol. 2021;9:588093.
  20. Anti-obesity natural products tested in juvenile zebrafish obesogenic tests and mouse 3T3-L1 adipogenesis assays. - Nakayama H, Hata K, Matsuoka I, Zang L, Kim Y, Chu D, Juneja LR, Nishimura N, Shimada Y*. Molecules. 2020; 25:5840.
  21. Messenger RNA-typing of environmental RNA (eRNA): a case study on zebrafish tank water with perspectives for the future development of eRNA analysis on aquatic vertebrates. - Tsuri K, Ikeda S, Hirohara T, Shimada Y, Minamoto T, Yamanaka H*. eDNA. 2020; 3:14-21.
  22. A comprehensive review on environmental toxicity of azole compounds to fish. - Bhagat J, Singh N, Nishimura N, Shimada Y*. Chemosphere. 2020; 262:128335.
  23. Toxicological interactions of microplastics / nanoplastics and environmental contaminants: Current Knowledge and Future Perspectives. - Bhagat J, Nishimura N, Shimada Y*. J Hazard Mater. 2021;405:123913.
  24. Developing a model for a siRNA delivery system by cancer implantation into zebrafish circulation. - Shimada Y*, Hazekawa M. Methods Mol Biol. 2021; 2174:263-275.
  25. Lacto-fermented Cauliflower fungus (Sparassis crispa) ameliorates hepatic steatosis by activating beta-oxidation in a diet-induced obese zebrafish. - Matsuura N, Zang L, Nishimura N, Shimada Y*. J Med Food. 2020;23:803-810.
  26.  Zebrafish: An emerging model to study microplastic and nanoplastic toxicity. - Bhagat J, Zang L, Nishimura N, Shimada Y*. Sci Total Environ. 2020;728:138707.
  27. Determination of anthocyanins and antioxidants in ‘Titanbicus’ edible flowers in vitro and in vivo. - Chensom S, Shimada Y, Nakayama H, Yoshida K, Kondo T, Katsuzaki H, Hasegawa S and Mishima T*. Plant Food Hum Nutr. 2020;75:265-271.
  28. Lecithin-based dermal drug delivery for anti-pigmentation maize ceramide. - Kagotani K, Nakayama H, Zang L, Fujimoto Y, Hayashi A, Sono R, Nishimura N, Shimada Y*. Molecules. 2020;25:1595. 
  29. Water extract of Yamato-Tachibana (Citrus tachibana) induces food intake in adult and larval zebrafish. - Yamada Y, Chensom S, Yonemoto H, Nakayama H, Zang L, Nishimura N, Mishima T, Shimada Y*. J Med Food. 2020;23:65-71.
  30. ZF-AutoML: An easy machine learning-based method to detect anomalies in fluorescent-labelled zebrafish. - Sawaki R, Sato D, Nakayama H, Nakagawa Y, Shimada Y. Inventions. 2019;4:72.
  31. Infection and RNA-seq analysis of a zebrafish tlr2 mutant shows a broad function of this Toll-like receptor in transcriptional and metabolic control and defense to Mycobacterium marinum infection. - Hu W, Yang S, Shimada Y, Münch M, Marín-Juez R, Meijer AH, Spaink HP. BMC Genomics. 2019;20:878.
  32. RNA-seq based transcriptome analysis of the anti-obesity effect of green tea extract using zebrafish obesity models. - Zang L, Shimada Y, Nakayama H, Kim Y, Chu D, Juneja LR, Kuroyanagi J, Nishimura N. Molecules. 2019;24:3256.
  33. Aging-associated microstructural deterioration of vertebra in zebrafish. - Monma Y, Shimada Y, Nakayama H, Zang L, Nishimura N, Tanaka T. Bone Rep. 2019;11:100215.
  34. Therapeutic silencing of centromere protein X ameliorates hyperglycemia in zebrafish and mouse models of type 2 diabetes mellitus. - Zang L, Shimada Y, Nakayama H, Chen W, Okamoto A, Koide H, Oku N, Dewa T, Shiota M, Nishimura N. Front Genet. 2019;10:693.
  35. An integrative evaluation method for the biological safety of down and feather materials. - Kawada T, Kuroyanagi J, Okazaki F, Taniguchi T, Suda N, Abiko S, Kaneco S, Nishimura N, Shimada Y*. Int J Mol Sci. 2019;20:1434.
  36. Toxicological evaluation of SiO2 nanoparticles by zebrafish embryo toxicity test. - Vranic S, Shimada Y, Ichihara S, Kimata M, Wu W, Tanaka T, Boland S, Tran L, Ichihara G. Int J Mol Sci. 2019;20:882.
  37. ZF-Mapper: Simple and complete freeware for fluorescence quantification in zebrafish images. - Yamamoto D, Sato D, Nakayama H, Nakagawa Y, Shimada Y. Zebrafish. 2019;16:233-239.
  38. Microbiome alteration in Type 2 Diabetes Mellitus model of zebrafish. - Okazaki F, Zang L, Nakayama H, Chen Z, Gao Z, Chiba H, Hui S, Aoki T, Nishimura N, Shimada Y. Sci Rep. 2019;9:867.
  39. A novel anti-obesity properties of Palmaria mollis in zebrafish and mouse models. - Nakayama H, Shimada Y, Zang L, Terasawa M, Nishiura K, Matsuda K, Toombs C, Langdon C, Nishimura N. Nutrients. 2018;10:1401.
  40. Zebrafish as a Model for Obesity and Diabetes. - Zang L, Maddison LA, Chen W. Front Cell Dev Biol., 2018;6:91.
  41. Lipidomic profiling on oxidized phospholipids in Type 2 Diabetes Mellitus model zebrafish. - Chen Z, Wu Y, Zang L, Shimada Y, Nakayama H, Rojeet S, Zhao Y, Miura Y, Nishimura N, Chiba H, Hui S. Anal Sci. 2018;34:1201-1208.
  42. Performing DNA nanotechnology operations on a zebrafish. - Yang J, Meng Z, Liu Q, Shimada Y, Olsthoorn RC, Spaink HP, Herrmann A, Kros A. Chem Sci. 2018;9:7271-7276.
  43. Dried Rotifer Sheet: A Novel Live Feed for Rearing First-Feeding Larvae. - Nakayama H, Katayama K, Onabe Y, Sato A, Nishimura N, Shimada Y. Zebrafish. 2018;15:291-294.
  44. Development of a Novel Zebrafish Model for Type 2 Diabetes Mellitus. - Zang L, Shimada Y, Nishimura N. Sci Rep. 2017;7:1461.
  45. Potential protective function of the sterol regulatory element binding factor 1–fatty acid desaturase 1/2 axis in early-stage age-related macular degeneration. - Ashikawa Y, Nishimura Y, Okabe S, Sato Y, Yuge M, Tada T, Miyao H, Murakami S, Kawaguchi K, Sasagawa S, Shimada Y, Tanaka T. Heliyon. 2017;3:3.

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Yasuhito Shimada, MD, PhD.
Phone: +81 (0) 59 231 5384